Package: pempi 1.0.0
pempi: Proportion Estimation with Marginal Proxy Information
Tools for the conditional estimation of the prevalence of an emerging or rare infectious disease, combining a survey sample with population-level case-count data and accounting for measurement error. Implements the methods proposed in Guerrier, Kuzmics and Victoria-Feser (2024) <doi:10.1080/01621459.2024.2313790>. The companion paper received the 2024 JASA Reproducibility Award.
Authors:
pempi_1.0.0.tar.gz
pempi_1.0.0.zip(r-4.7)pempi_1.0.0.zip(r-4.6)pempi_1.0.0.zip(r-4.5)
pempi_1.0.0.tgz(r-4.6-any)pempi_1.0.0.tgz(r-4.5-any)
pempi_1.0.0.tar.gz(r-4.7-any)pempi_1.0.0.tar.gz(r-4.6-any)
pempi_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
pempi/json (API)
| # Install 'pempi' in R: |
| install.packages('pempi', repos = c('https://stephaneguerrier.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/stephaneguerrier/pempi/issues
Pkgdown/docs site:https://stephaneguerrier.github.io
- covid19_austria - COVID-19 Survey Data from Statistics Austria
covidprevalencerare-infectious-diseasesstatistics
Last updated from:bf63e66881. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 120 | ||
| source / vignettes | OK | 225 | ||
| linux-release-x86_64 | OK | 109 | ||
| macos-release-arm64 | OK | 112 | ||
| macos-oldrel-arm64 | OK | 85 | ||
| windows-devel | OK | 72 | ||
| windows-release | OK | 68 | ||
| windows-oldrel | OK | 63 | ||
| wasm-release | OK | 89 |
Exports:conditional_mleget_probmarginal_mlemoment_estimatorsim_Rssurvey_mleupdate_prevalence
Dependencies:
Get Started
Rendered fromget_started.Rmdusingknitr::rmarkdownon May 15 2026.Last update: 2026-05-15
Started: 2022-05-02
How to Cite
Rendered fromcitation.Rmdusingknitr::rmarkdownon May 15 2026.Last update: 2026-05-15
Started: 2026-05-15
Results Reproducibility
Rendered fromreproducibility.Rmdusingknitr::rmarkdownon May 15 2026.Last update: 2026-05-15
Started: 2021-01-19
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compute MLE based on the full information R1, R2, R3 and R4. | conditional_mle |
| COVID-19 Survey Data from Statistics Austria (November 2020) | covid19_austria |
| Compute sucess probabilities (tau_j's) | get_prob |
| Compute (marginalized) MLE based on the partial information R1 and R3. | marginal_mle |
| Compute moment-based estimator. | moment_estimator |
| Simulate data (R, R0, R1, R2, R3 and R4) | sim_Rs |
| Compute proportion in the survey sample (standard estimator) | survey_mle |
| Update prevalence using new case prevalence rates | update_prevalence |
